PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.888CN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 280aa    MW: 31154.7 Da    PI: 4.7318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.888CNgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-077282446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W+ Ia++++ gRt++++k++w++
      Aradu.888CN  7 WSQIAARLP-GRTDNEIKNFWNS 28
                     *********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.938134IPR017930Myb domain
CDDcd001671.42E-5430No hitNo description
SuperFamilySSF466894.81E-7539IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-10534IPR009057Homeodomain-like
PfamPF002491.3E-5728IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSTFNLWSQI AARLPGRTDN EIKNFWNSTV KKRLKLNNNS TSSPNNTDSS EPNSIRDNNV  60
VMGTTTSSNN NGIMHINDHH HHHHQDLMTM SMCMDNSSSS TSSSTMHTHH HAMVFGDPFS  120
MVTNNNNNHY EMATGVAGFH GAMAGDLPLG NSFHGGDYGG MLDEESTDKM GLESDLSLPP  180
LESSIRSTEE IIIINSNNNA SSIDDMKSHN NHFNNNNNTN NDSCFNNTDN QVLNNNNCSN  240
EEDLFGFGNH GQVENLRMGE WDFEGLMQDI SYFPSLDFQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-44AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936844.10.0PREDICTED: transcription factor MYB21-like
TrEMBLA0A0B2RG486e-64A0A0B2RG48_GLYSO; Transcription factor MYB46
TrEMBLI1N6I26e-64I1N6I2_SOYBN; Uncharacterized protein
STRINGGLYMA19G05080.12e-63(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-13myb domain protein 46